PepBDB -- a structural database of biological peptide-mediated interactions

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View the peptide-receptor complex

PDB code: 2OBO
Peptide ID: 2obo_B
Representation:
Peptide: ball and stick
Protein: cartoon

Download files:
receptor.pdb
peptide.pdb
complex.pdb
binding data

Protein style
Protein color Pure
Rainbow
Peptide style
Peptide color Pure
Rainbow
Action
LIGPLOT of 2obo_B peptide binding
interaction

interaction

Interacting peptide residues:
B: 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 41,

Interacting receptor residues:
A: -1, 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 16, 19, 20, 21, 23, 25, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 42, 43, 44, 59, 62, 63, 64, 65, 70, 85, 88, 92, 94, 107, 108, 109, 110, 111, 142, 144,
C: 29, 30, 31, 35, 107, 109, 110, 111, 113,
D: 28, 29, 30, 31, 32, 33, 36,

Peptide sequence:
>B
KKGSVVIVGRIVLSGKPAIIPKK

Receptor sequence(s):
>A
MGAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCT
CGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMRSG
>C
VEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLS
PRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTM
>D
KGSVVIVGRIVLSGKPA


The pepBDB database is updated monthly. Current version: 2020-03-18
huanglab@hust.edu.cn, Lab of Biophysics and Molecular Modeling