PepBDB -- a structural database of biological peptide-mediated interactions

Huang lab       Home       Browse      Search      Help & example      Download     

View the peptide-receptor complex

PDB code: 2XNI
Peptide ID: 2xni_C
Representation:
Peptide: ball and stick
Protein: cartoon

Download files:
receptor.pdb
peptide.pdb
complex.pdb
binding data

Protein style
Protein color Pure
Rainbow
Peptide style
Peptide color Pure
Rainbow
Action
LIGPLOT of 2xni_C peptide binding
interaction

interaction

Interacting peptide residues:
C: 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38,

Interacting receptor residues:
A: 3, 4, 5, 6, 7, 8, 9, 10, 11, 16, 19, 20, 21, 23, 25, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 43, 44, 59, 60, 61, 62, 63, 64, 65, 70, 85, 92, 94, 107, 108, 109, 110, 111, 142, 144,
B: 29, 30, 31, 35, 109, 110, 111, 113,
D: 28, 29, 30, 31, 32, 33,

Peptide sequence:
>C
KGSVVIVGRIVLSGKPAIIPK

Receptor sequence(s):
>A
GAPITAYAQQTRGLLGCIITSLTGRDKNQVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTC
GSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMR
>B
QVEGEVQIVSTATQTFLATCINGVCWTVYHGAGTRTIASPKGPVIQMYTNVDQDLVGWPAPQGSRSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLL
SPRPISYLKGSSGGPLLCPAGHAVGLFRAAVCTRGVAKAVDFIPVENLETTMR
>D
GSVVIVGRIVLSGKPA


The pepBDB database is updated monthly. Current version: 2020-03-18
huanglab@hust.edu.cn, Lab of Biophysics and Molecular Modeling