XDock Server

The XDock server: A universal docking server for modeling protein/nucleic acid-ligand interactions.

upload Site residue Id:

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OR provide your residues ID strings in ChainID:Residues ID: (Example: 1BKX_site:A:50,A:122,A:173,A:183,
1AJV_site:A:25,A:49,B:25,B:49,
1F1T_site:A:7,A:8,A:24,A:28,A:29,A:30)

References:

Feng Y, Zhang K, Wu Q, Huang SY. NLDock: a Fast Nucleic Acid-Ligand Docking Algorithm for Modeling RNA/DNA-Ligand Complexes. J Chem Inf Model. 2021 Sep 27;61(9):4771-4782.
Feng Y, Huang SY. ITScore-NL: An Iterative Knowledge-Based Scoring Function for Nucleic Acid-Ligand Interactions. J Chem Inf Model. 2020 Dec 28;60(12):6698-6708.
Huang SY, Zou X. Ensemble docking of multiple protein structures: considering protein structural variations in molecular docking. Proteins. 2007 Feb 1;66(2):399-421.
Huang SY, Zou X. An iterative knowledge-based scoring function to predict protein-ligand interactions: I. Derivation of interaction potentials. J Comput Chem. 2006 Nov 30;27(15):1866-75.