MODPEP -- fast ab initio structure prediction of linear peptides or disorder proteins

Huang Lab        MODPEP        Help        Output example       

    Copy and paste your peptide sequence below (Sample input):

    OR upload your peptide sequence file :  
    Number of conformations to generate :  
    Program for secondary structure prediction :  

    Enter your email address :  
    Enter your job name :          
    Refine the peptide conformations :    [help]


Download the MODPEP standalone package new

  1. Yan Y, Zhang D, Huang SY. Efficient conformational ensemble generation of protein-bound peptides. J Cheminform. 2017;9:59.
  2. Jones DT. Protein secondary structure prediction based on position-specific scoring matrices. J Mol Biol. 1999;292:195-202.
  3. Rose AS, Bradley AR, Valasatava Y, Duarte JM, Prlic A, Rose PW. NGL viewer: web-based molecular graphics for large complexes. Bioinformatics. 34: 3755-3758, 2018.
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