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MPRDock Server
Protein-ensemble-RNA docking by efficient consideration of protein flexibility through multiple protein structures |
| [Huang Lab] [MPRDock] [Help] [Output example] |
Receptor PDB file Ligand PDB file MPRDock output [1] [2] [3] [4] [5] [6] [7] [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19] [20] Top 10 Predictions Top 100 Predictions All the results in a package |
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Receptor style
Receptor color
Pure
Rainbow MODEL No.
Ligand style
Action
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| Molecule | PDB ID | Chain ID | Align_length | Coverage | Seq_ID (%) |
|---|---|---|---|---|---|
| Receptor | 2XNQ | A | 75 | 1.000 | 100.0 |
| Receptor | 2XNR | A | 75 | 1.000 | 100.0 |
| Receptor | 2KVI | A | 74 | 0.987 | 100.0 |
| Receptor | 2L41 | A | 74 | 0.987 | 100.0 |
| Receptor | 1WF2 | A | 73 | 0.973 | 37.0 |
| Receptor | 2MXY | A | 73 | 0.973 | 37.0 |
| Receptor | 2MZ1 | A | 73 | 0.973 | 37.0 |
| Receptor | 2N3L | A | 69 | 0.920 | 38.7 |
| Receptor | 2N7C | A | 69 | 0.920 | 38.7 |
| Receptor | 2JVO | A | 72 | 0.960 | 36.1 |
| Rank | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 |
|---|---|---|---|---|---|---|---|---|---|---|
| Docking Score | -332.64 | -287.80 | -263.51 | -246.77 | -244.21 | -231.64 | -225.82 | -224.41 | -219.35 | -217.98 |
| Ligand rmsd (Å) | 0.35 | 4.77 | 7.22 | 12.44 | 7.28 | 11.59 | 15.68 | 13.15 | 9.56 | 10.13 |
| (a) | Row 1: The ranks of the models. |
| (b) | Row 2: The docking energy scores. |
| (c) | Row 3: The ligand RMSDs from the input structures or modeled structures by homology modeling. |