PepBDB -- a structural database of biological peptide-mediated interactions

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View the peptide-receptor complex

PDB code: 1AFQ
Peptide ID: 1afq_A
Representation:
Peptide: ball and stick
Protein: cartoon

Download files:
receptor.pdb
peptide.pdb
complex.pdb
binding data

Protein style
Protein color Pure
Rainbow
Peptide style
Peptide color Pure
Rainbow
Action
LIGPLOT of 1afq_A peptide binding
interaction

interaction

Interacting peptide residues:
A: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10,

Interacting receptor residues:
B: 20, 23, 24, 25, 26, 27, 28, 29, 116, 117, 120, 121, 122, 123, 137,
C: 157, 205, 206, 207,

Peptide sequence:
>A
CGVPAIQPVL

Receptor sequence(s):
>B
IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFS
QTVSAVCLPSASDDFAAGTTCVTTGWGLTRY
>C
NTPDRLQQASLPLLSNTNCKKYWGTKIKDAMICAGASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN


The pepBDB database is updated monthly. Current version: 2020-03-18
huanglab@hust.edu.cn, Lab of Biophysics and Molecular Modeling