PepBDB -- a structural database of biological peptide-mediated interactions

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View the peptide-receptor complex

PDB code: 1AVF
Peptide ID: 1avf_P
Representation:
Peptide: ball and stick
Protein: cartoon

Download files:
receptor.pdb
peptide.pdb
complex.pdb
binding data

Protein style
Protein color Pure
Rainbow
Peptide style
Peptide color Pure
Rainbow
Action
LIGPLOT of 1avf_P peptide binding
interaction

interaction

Interacting peptide residues:
P: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20,

Interacting receptor residues:
A: 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 28, 31, 91, 92, 93, 94, 111, 114, 115, 116, 117, 145, 146, 147, 154, 155, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 175, 246, 283, 310,

Peptide sequence:
>P
AVVKVPLKKFKSIRETMKEKG

Receptor sequence(s):
>A
VTYEPMAYMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYSGSLTGFFGYDTLTVQSIQVPNQEFG
LSENEPGTNFVYAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGW
CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDV
FLRSYYSVYDLGNNRVGFATAA


The pepBDB database is updated monthly. Current version: 2020-03-18
huanglab@hust.edu.cn, Lab of Biophysics and Molecular Modeling