PepBDB -- a structural database of biological peptide-mediated interactions

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View the peptide-receptor complex

PDB code: 1BD2
Peptide ID: 1bd2_C
Representation:
Peptide: ball and stick
Protein: cartoon

Download files:
receptor.pdb
peptide.pdb
complex.pdb
binding data

Protein style
Protein color Pure
Rainbow
Peptide style
Peptide color Pure
Rainbow
Action
LIGPLOT of 1bd2_C peptide binding
interaction

interaction

Interacting peptide residues:
C: 1, 2, 3, 4, 5, 6, 7, 8, 9,

Interacting receptor residues:
A: 5, 7, 9, 45, 59, 63, 66, 67, 69, 70, 72, 73, 76, 77, 80, 81, 84, 97, 99, 116, 123, 143, 146, 147, 152, 155, 156, 159, 163, 167, 171,
D: 27, 28, 30, 31, 93, 95, 96,
E: 96, 97, 98, 99, 100, 104,

Peptide sequence:
>C
LLFGYPVYV

Receptor sequence(s):
>A
GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYG
CDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEAT
LRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWE
>D
QQVKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYFCAAMEGAQKLVF
GQGTRLTINPNIQNPDPAVYQLRDSKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRFKSNSAVAWSNKSDFACANAFNNSIIPEDTF
>E
GVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYPGGGFYE
QYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQ
DPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD


The pepBDB database is updated monthly. Current version: 2020-03-18
huanglab@hust.edu.cn, Lab of Biophysics and Molecular Modeling